Keyword Analysis & Research: importcds monocle3


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Keyword CPC PCC Volume Score Length of keyword
importcds monocle31.580.36032118
importcds1.920.93105149
monocle30.050.5882818

Keyword Research: People who searched importcds monocle3 also searched

Keyword CPC PCC Volume Score
importcds monocle30.470.5526698

Search Results related to importcds monocle3 on Search Engine

  • Issue with importCDS function · Issue #159 · cole …

    github.com

    https://github.com/cole-trapnell-lab/monocle3/issues/159

    WebJul 22, 2019 · The "importCDS (data_to_be_imported)" function is giving an error "could not find function "importCDS"". Is this function not compatible with Monocle3? If not what is …

    DA: 41 PA: 49 MOZ Rank: 83

  • importCDS: Import a seurat or scatter/scran CellDataSet object and

    rdrr.io

    https://rdrr.io/bioc/monocle/man/importCDS.html

    DA: 65 PA: 83 MOZ Rank: 65

  • Importing a merged Seurat dataset into Monocle

    github.com

    https://github.com/cole-trapnell-lab/monocle3/issues/111

    WebDec 7, 2018 · How to import multiple 10X datasets into monocle for pseudotime analysis. First, we use seurat to import and merge 10X data, then convert to monocle format.

    DA: 40 PA: 74 MOZ Rank: 19

  • Monocle - GitHub Pages

    github.io

    http://cole-trapnell-lab.github.io/monocle-release/images/vignette/cluster_cells_unsup_gene_pick-1.png

    WebTo convert from either a Seurat object or a SCESet to a CellDataSet, execute the function importCDS() as shown: # Where 'data_to_be_imported' can either be a Seurat object # …

    DA: 18 PA: 62 MOZ Rank: 31

  • Monocle 3 - GitHub Pages

    github.io

    https://cole-trapnell-lab.github.io/monocle3/images/worm_trajectory.png

    WebMonocle 3 can help you purify them or characterize them further by identifying key marker genes that you can use in follow up experiments such as immunofluorescence or flow …

    DA: 5 PA: 8 MOZ Rank: 49

  • Seurat object can't be imported into monocle:the object …

    github.com

    https://github.com/satijalab/seurat/issues/1163

    WebFeb 20, 2019 · To use the importCDS function from Monocle 2, you're likely going to have to use Seurat v2 (not v3 as it looks like you have installed here). I'm not sure if the alpha …

    DA: 22 PA: 74 MOZ Rank: 3

  • Package 'monocle3' reference manual

    r-universe.dev

    https://blaserlab.r-universe.dev/monocle3/doc/manual.html

    Web## Not run: expression_matrix <-readRDS (system.file ('extdata', 'worm_l2/worm_l2_expression_matrix.rds', package = 'monocle3')) cell_metadata < …

    DA: 91 PA: 48 MOZ Rank: 7

  • r - Subsetting a Cell Data Set within Monocle - Stack …

    stackoverflow.com

    https://stackoverflow.com/questions/47514779/subsetting-a-cell-data-set-within-monocle

    WebNov 27, 2017 · Ok, so I found out I can use x.subset <- x[,example.cells] to subset the data. This method seems to work fine, but i am worried about what you said about messing up …

    DA: 68 PA: 96 MOZ Rank: 20

  • Monocle 3 - GitHub Pages

    github.io

    https://cole-trapnell-lab.github.io/monocle3/docs/introduction/

    WebThe Monocle 3 package provides a toolkit for analyzing single-cell gene expression experiments. Monocle 3 can help you perform three main types of analysis: Clustering, …

    DA: 20 PA: 30 MOZ Rank: 74


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