webDescription This function takes a monocle CellDataSet and converts it to another type of object used in another popular single cell analysis toolkit. It currently supports Scran and …
webDec 7, 2018 · cd4.monocle <- importCDS(cd4.combined, import_all = TRUE) Here, I am reading in 10X data using Seurat (v2) w/ the Read10X function and then creating the …
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importCDS: Import a seurat or scatter/scran CellDataSet object and
webFeb 19, 2019 · Hello, @ctrapnell @rcannood @evolvedmicrobe I was wondering why my Seurat object can't be imported into monocle? I follow the official website to do it, but it turns out that the importCDS doesn't …
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Seurat object can't be imported into monocle:the …
webFeb 20, 2019 · To use the importCDS function from Monocle 2, you're likely going to have to use Seurat v2 (not v3 as it looks like you have installed here). I'm not sure if the alpha version of Monocle 3 has updated the …
webJul 22, 2019 · I think importCDS () is a monocle2 function and isn't found within monocle3 yet. I haven't found an alternative for importCDS (). Importing a Seurat object to …
webThe first step in working with Monocle is to load up your data into Monocle's main class, CellDataSet: pd <- new ( "AnnotatedDataFrame" , data = sample_sheet ) fd <- new ( "AnnotatedDataFrame" , data = …
webThe first step in working with Monocle 3 is to load up your data into Monocle 3's main class, cell_data_set: cds <-new_cell_data_set (expression_matrix, cell_metadata = …
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monocle_import: Import a seurat or scatter/scran CellDataSet …
webJul 20, 2023 · Description This function is modified by the importCDS function. Usage monocle_import(otherCDS, import_all = FALSE) Arguments Value a new monocle cell …
webSingle-cell trajectory analysis how cells choose between one of several possible end states. The new reconstruction algorithms introduced in Monocle 2 can robustly reveal branching trajectories, along with the …